HL_9VTH_020

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_020 not in the Motif Atlas

Homologous match to HL_9H3G_093

Geometric discrepancy: 0.072

The information below is about HL_9H3G_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9VTH|1|11|A|903
9VTH|1|11|G|904
9VTH|1|11|G|905
9VTH|1|11|U|906
9VTH|1|11|G|907
9VTH|1|11|A|908
9VTH|1|11|A|909
9VTH|1|11|A|910
9VTH|1|11|U|911
9VTH|1|11|U|912

Current chains

Chain 11

18S rRNA

Nearby chains

Chain 15

RNA (5'-R(P*AP*CP*AP*AP*UP*G)-3')

Chain SE

40S ribosomal protein S5

Chain SI

40S ribosomal protein S14-2