HL_9VTH_036
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CAUCAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VTH_036 not in the Motif Atlas
- Homologous match to HL_4V9F_071
- Geometric discrepancy: 0.1367
- The information below is about HL_4V9F_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_59381.5
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
9VTH|1|12|C|36
9VTH|1|12|A|37
9VTH|1|12|U|38
9VTH|1|12|C|39
9VTH|1|12|A|40
9VTH|1|12|G|41
Current chains
- Chain 12
- 5S rRNA
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain LE
- 60S ribosomal protein L11-1
- Chain LK
- 60S ribosomal protein L5-like
Coloring options: