HL_9VTH_038
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UAGCGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VTH_038 not in the Motif Atlas
- Homologous match to HL_9H3G_001
- Geometric discrepancy: 0.0795
- The information below is about HL_9H3G_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
9VTH|1|13|U|50
9VTH|1|13|A|51
9VTH|1|13|G|52
9VTH|1|13|C|53
9VTH|1|13|G|54
9VTH|1|13|A|55
9VTH|1|13|A|56
9VTH|1|13|A|57
9VTH|1|13|U|58
9VTH|1|13|G|59
Current chains
- Chain 13
- 5.8S rRNA
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain LM
- Large ribosomal subunit protein uL23
- Chain LO
- 60S ribosomal protein L35-like
- Chain Lk
- Ribosomal protein L37
- Chain Lm
- 60S ribosomal protein L39-3
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