HL_9VTH_039
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UGAAUUGCAGAAUCCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 9VTH|1|13|C|85, 9VTH|1|13|C|87, 9VTH|1|13|U|89
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VTH_039 not in the Motif Atlas
- Homologous match to HL_9PN5_074
- Geometric discrepancy: 0.5506
- The information below is about HL_9PN5_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68571.2
- Basepair signature
- cWW-tSH-tHS-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9VTH|1|13|U|72
9VTH|1|13|G|73
9VTH|1|13|A|74
9VTH|1|13|A|75
9VTH|1|13|U|76
9VTH|1|13|U|77
9VTH|1|13|G|78
9VTH|1|13|C|79
9VTH|1|13|A|80
9VTH|1|13|G|81
9VTH|1|13|A|82
9VTH|1|13|A|83
9VTH|1|13|U|84
9VTH|1|13|C|85
9VTH|1|13|C|86
9VTH|1|13|C|87
9VTH|1|13|G|88
9VTH|1|13|U|89
9VTH|1|13|G|90
9VTH|1|13|A|91
9VTH|1|13|A|92
Current chains
- Chain 13
- 5.8S rRNA
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain LN
- 60S ribosomal protein L26-1
- Chain LO
- 60S ribosomal protein L35-like
- Chain Lk
- Ribosomal protein L37
- Chain Lm
- 60S ribosomal protein L39-3
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