HL_9VTH_040

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CAAGUUG

Length

7 nucleotides

Bulged bases

9VTH|1|13|G|114, 9VTH|1|13|U|116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_040 not in the Motif Atlas

Homologous match to HL_9H3G_003

Geometric discrepancy: 0.0767

The information below is about HL_9H3G_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23875.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

18

Unit IDs

9VTH|1|13|C|111
9VTH|1|13|A|112
9VTH|1|13|A|113
9VTH|1|13|G|114
9VTH|1|13|U|115
9VTH|1|13|U|116
9VTH|1|13|G|117

Current chains

Chain 13

5.8S rRNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain LM

Large ribosomal subunit protein uL23

Chain Lk

Ribosomal protein L37

Chain Lm

60S ribosomal protein L39-3