HL_9VTH_041

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CAUUAG

Length

6 nucleotides

Bulged bases

9VTH|1|13|U|131

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_041 not in the Motif Atlas

Geometric match to HL_4WF9_007

Geometric discrepancy: 0.3871

The information below is about HL_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23875.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

18

Unit IDs

9VTH|1|13|C|128
9VTH|1|13|A|129
9VTH|1|13|U|130
9VTH|1|13|U|131
9VTH|1|13|A|132
9VTH|1|13|G|133

Current chains

Chain 13

5.8S rRNA

Nearby chains