HL_9VTH_046

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUGGAAGG

Length

8 nucleotides

Bulged bases

9VTH|1|14|G|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_046 not in the Motif Atlas

Homologous match to HL_9H3G_009

Geometric discrepancy: 0.093

The information below is about HL_9H3G_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13999.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

25

Unit IDs

9VTH|1|14|C|191
9VTH|1|14|U|192
9VTH|1|14|G|193
9VTH|1|14|G|194
9VTH|1|14|A|195
9VTH|1|14|A|196
9VTH|1|14|G|197
9VTH|1|14|G|198

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LN

60S ribosomal protein L26-1

Chain Lg

60S ribosomal protein L32-1