HL_9VTH_053
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CUUUUGAUACG
- Length
- 11 nucleotides
- Bulged bases
- 9VTH|1|14|G|539
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VTH_053 not in the Motif Atlas
- Homologous match to HL_9H3G_017
- Geometric discrepancy: 0.1979
- The information below is about HL_9H3G_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9VTH|1|14|C|534
9VTH|1|14|U|535
9VTH|1|14|U|536
9VTH|1|14|U|537
9VTH|1|14|U|538
9VTH|1|14|G|539
9VTH|1|14|A|540
9VTH|1|14|U|541
9VTH|1|14|A|542
9VTH|1|14|C|543
9VTH|1|14|G|544
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain LT
- 60S ribosomal protein L14-1
- Chain LX
- 60S ribosomal protein L18a
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