HL_9VTH_056

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

9VTH|1|14|C|659

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_056 not in the Motif Atlas

Homologous match to HL_9PN5_014

Geometric discrepancy: 0.1445

The information below is about HL_9PN5_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33597.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

142

Unit IDs

9VTH|1|14|U|651
9VTH|1|14|C|652
9VTH|1|14|U|653
9VTH|1|14|U|654
9VTH|1|14|G|655
9VTH|1|14|A|656
9VTH|1|14|A|657
9VTH|1|14|A|658
9VTH|1|14|C|659
9VTH|1|14|A|660

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LC

60S ribosomal protein L3

Chain LI

60s ribosomal protein l27a-3

Chain Lg

60S ribosomal protein L32-1