HL_9VTH_057
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GCGAGUAAAC
- Length
- 10 nucleotides
- Bulged bases
- 9VTH|1|14|G|701, 9VTH|1|14|A|703
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VTH_057 not in the Motif Atlas
- Homologous match to HL_9H3G_021
- Geometric discrepancy: 0.0855
- The information below is about HL_9H3G_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87268.5
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 17
Unit IDs
9VTH|1|14|G|697
9VTH|1|14|C|698
9VTH|1|14|G|699
9VTH|1|14|A|700
9VTH|1|14|G|701
9VTH|1|14|U|702
9VTH|1|14|A|703
9VTH|1|14|A|704
9VTH|1|14|A|705
9VTH|1|14|C|706
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain 13
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LD
- 60S ribosomal protein L4-like
- Chain LN
- 60S ribosomal protein L26-1
- Chain LS
- 60S ribosomal protein L13
- Chain LU
- Ribosomal protein L15
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