HL_9VTH_059

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CCUGAG

Length

6 nucleotides

Bulged bases

9VTH|1|14|A|746

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_059 not in the Motif Atlas

Geometric match to HL_8GLP_080

Geometric discrepancy: 0.2162

The information below is about HL_8GLP_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23875.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

18

Unit IDs

9VTH|1|14|C|742
9VTH|1|14|C|743
9VTH|1|14|U|744
9VTH|1|14|G|745
9VTH|1|14|A|746
9VTH|1|14|G|747

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LP

60S ribosomal protein L7-4-like

Chain LY

60S ribosomal protein L21-1-like