HL_9VTH_064

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

9VTH|1|14|C|969, 9VTH|1|14|A|972

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_064 not in the Motif Atlas

Homologous match to HL_9H3G_028

Geometric discrepancy: 0.1877

The information below is about HL_9H3G_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.4

Basepair signature

cWW-F-F

Number of instances in this motif group

12

Unit IDs

9VTH|1|14|C|968
9VTH|1|14|C|969
9VTH|1|14|U|970
9VTH|1|14|C|971
9VTH|1|14|A|972
9VTH|1|14|G|973

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LI

60s ribosomal protein l27a-3

Chain Ld

60S ribosomal protein L29

Chain Lp

60S ribosomal protein L44