HL_9VTH_065

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGCAACG

Length

7 nucleotides

Bulged bases

9VTH|1|14|C|1040

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_065 not in the Motif Atlas

Geometric match to HL_4QLM_001

Geometric discrepancy: 0.2301

The information below is about HL_4QLM_001

Detailed Annotation

GNRA

Broad Annotation

GNRA

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9VTH|1|14|C|1035
9VTH|1|14|G|1036
9VTH|1|14|C|1037
9VTH|1|14|A|1038
9VTH|1|14|A|1039
9VTH|1|14|C|1040
9VTH|1|14|G|1041

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LE

60S ribosomal protein L11-1

Chain SK

40S ribosomal protein S18