HL_9VTH_081
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CGCAUCAG
- Length
- 8 nucleotides
- Bulged bases
- 9VTH|1|14|C|1852, 9VTH|1|14|U|1854, 9VTH|1|14|A|1856
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VTH_081 not in the Motif Atlas
- Homologous match to HL_9H3G_045
- Geometric discrepancy: 0.084
- The information below is about HL_9H3G_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_28592.5
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
9VTH|1|14|C|1850
9VTH|1|14|G|1851
9VTH|1|14|C|1852
9VTH|1|14|A|1853
9VTH|1|14|U|1854
9VTH|1|14|C|1855
9VTH|1|14|A|1856
9VTH|1|14|G|1857
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain LD
- 60S ribosomal protein L4-like
- Chain LL
- 60S ribosomal protein L17-1 isoform X2
- Chain Lk
- Ribosomal protein L37
- Chain Lm
- 60S ribosomal protein L39-3
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