HL_9VTH_088
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GUAACUAUGAC
- Length
- 11 nucleotides
- Bulged bases
- 9VTH|1|14|A|2259
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VTH_088 not in the Motif Atlas
- Homologous match to HL_9H3G_052
- Geometric discrepancy: 0.3065
- The information below is about HL_9H3G_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_82185.4
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9VTH|1|14|G|2256
9VTH|1|14|U|2257
9VTH|1|14|A|2258
9VTH|1|14|A|2259
9VTH|1|14|C|2260
9VTH|1|14|U|2261
9VTH|1|14|A|2262
9VTH|1|14|U|2263
9VTH|1|14|G|2264
9VTH|1|14|A|2265
9VTH|1|14|C|2266
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain 11
- Small subunit ribosomal RNA; SSU rRNA
- Chain 16
- Transfer RNA; tRNA
Coloring options: