HL_9VTH_094

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

9VTH|1|14|G|2621

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_094 not in the Motif Atlas

Homologous match to HL_9H3G_055

Geometric discrepancy: 0.0884

The information below is about HL_9H3G_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

9VTH|1|14|C|2619
9VTH|1|14|U|2620
9VTH|1|14|G|2621
9VTH|1|14|G|2622
9VTH|1|14|G|2623
9VTH|1|14|G|2624
9VTH|1|14|C|2625
9VTH|1|14|G|2626
9VTH|1|14|G|2627

Current chains

Chain 14

25S rRNA

Nearby chains

Chain 16

Transfer RNA; tRNA

Chain LJ

60S ribosomal protein L10

Chain Ld

60S ribosomal protein L29