HL_9VTH_095

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUAAAAGAUAACG

Length

13 nucleotides

Bulged bases

9VTH|1|14|A|2640, 9VTH|1|14|C|2647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_095 not in the Motif Atlas

Homologous match to HL_9PN5_053

Geometric discrepancy: 0.1053

The information below is about HL_9PN5_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.4

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

14

Unit IDs

9VTH|1|14|U|2636
9VTH|1|14|U|2637
9VTH|1|14|A|2638
9VTH|1|14|A|2639
9VTH|1|14|A|2640
9VTH|1|14|A|2641
9VTH|1|14|G|2642
9VTH|1|14|A|2643
9VTH|1|14|U|2644
9VTH|1|14|A|2645
9VTH|1|14|A|2646
9VTH|1|14|C|2647
9VTH|1|14|G|2648

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LJ

60S ribosomal protein L10

Chain LY

60S ribosomal protein L21-1-like

Chain Ld

60S ribosomal protein L29