HL_9VTH_097

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_097 not in the Motif Atlas

Homologous match to HL_9PN5_055

Geometric discrepancy: 0.0793

The information below is about HL_9PN5_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52651.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

33

Unit IDs

9VTH|1|14|C|2696
9VTH|1|14|A|2697
9VTH|1|14|G|2698
9VTH|1|14|A|2699
9VTH|1|14|A|2700
9VTH|1|14|G|2701
9VTH|1|14|G|2702
9VTH|1|14|G|2703

Current chains

Chain 14

25S rRNA

Nearby chains

Chain 16

Transfer RNA; tRNA

Chain LJ

60S ribosomal protein L10

Chain LY

60S ribosomal protein L21-1-like