HL_9VTH_102

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

9VTH|1|14|G|2901

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_102 not in the Motif Atlas

Homologous match to HL_9PN5_060

Geometric discrepancy: 0.1018

The information below is about HL_9PN5_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

38

Unit IDs

9VTH|1|14|A|2900
9VTH|1|14|G|2901
9VTH|1|14|C|2902
9VTH|1|14|A|2903
9VTH|1|14|G|2904
9VTH|1|14|A|2905
9VTH|1|14|A|2906
9VTH|1|14|U|2907

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LF

60S ribosomal protein L9-1

Chain Ln

Ubiquitin-60S ribosomal protein L40