HL_9VTH_109

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGGAAGAG

Length

8 nucleotides

Bulged bases

9VTH|1|14|A|3236, 9VTH|1|14|A|3237, 9VTH|1|14|A|3239

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_109 not in the Motif Atlas

Homologous match to HL_9H3G_070

Geometric discrepancy: 0.1947

The information below is about HL_9H3G_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31089.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

9VTH|1|14|C|3233
9VTH|1|14|G|3234
9VTH|1|14|G|3235
9VTH|1|14|A|3236
9VTH|1|14|A|3237
9VTH|1|14|G|3238
9VTH|1|14|A|3239
9VTH|1|14|G|3240

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LC

60S ribosomal protein L3

Chain LG

60S ribosomal protein L13a-4