HL_9VVI_028
3D structure
- PDB id
- 9VVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome with YheS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CUGCAACUCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VVI_028 not in the Motif Atlas
- Homologous match to HL_6CZR_100
- Geometric discrepancy: 0.1748
- The information below is about HL_6CZR_100
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_02887.2
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9VVI|1|A|C|1314
9VVI|1|A|U|1315
9VVI|1|A|G|1316
9VVI|1|A|C|1317
9VVI|1|A|A|1318
9VVI|1|A|A|1319
9VVI|1|A|C|1320
9VVI|1|A|U|1321
9VVI|1|A|C|1322
9VVI|1|A|G|1323
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain M
- Small ribosomal subunit protein uS13
- Chain N
- Small ribosomal subunit protein uS14
- Chain S
- Small ribosomal subunit protein uS19
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