HL_9VXN_099
3D structure
- PDB id
- 9VXN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.51 Å
Loop
- Sequence
- GAC(B8N)CAACAC
- Length
- 10 nucleotides
- Bulged bases
- 9VXN|1|S2|A|1253
- QA status
- Modified nucleotides: B8N
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VXN_099 not in the Motif Atlas
- Homologous match to HL_9PN5_101
- Geometric discrepancy: 0.0718
- The information below is about HL_9PN5_101
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9VXN|1|S2|G|1245
9VXN|1|S2|A|1246
9VXN|1|S2|C|1247
9VXN|1|S2|B8N|1248
9VXN|1|S2|C|1249
9VXN|1|S2|A|1250
9VXN|1|S2|A|1251
9VXN|1|S2|C|1252
9VXN|1|S2|A|1253
9VXN|1|S2|C|1254
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SQ
- Small ribosomal subunit protein uS9
- Chain SU
- Small ribosomal subunit protein uS10
- Chain Sd
- Small ribosomal subunit protein uS14
- Chain u
- Transfer RNA; tRNA
- Chain v
- Transfer RNA; tRNA
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