HL_9VXN_109
3D structure
- PDB id
- 9VXN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.51 Å
Loop
- Sequence
- CAGUCGGUAG
- Length
- 10 nucleotides
- Bulged bases
- 9VXN|1|u|C|17, 9VXN|1|u|G|18, 9VXN|1|u|G|19
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VXN_109 not in the Motif Atlas
- Homologous match to HL_1N78_001
- Geometric discrepancy: 0.333
- The information below is about HL_1N78_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78347.5
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
9VXN|1|u|C|13
9VXN|1|u|A|14
9VXN|1|u|G|15
9VXN|1|u|U|16
9VXN|1|u|C|17
9VXN|1|u|G|18
9VXN|1|u|G|19
9VXN|1|u|U|20
9VXN|1|u|A|21
9VXN|1|u|G|22
Current chains
- Chain u
- A/P-tRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LJ
- Large ribosomal subunit protein uL5
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