HL_9W0N_003

3D structure

PDB id

9W0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

9W0N|1|1|A|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9W0N_003 not in the Motif Atlas

Homologous match to HL_8B0X_035

Geometric discrepancy: 0.1641

The information below is about HL_8B0X_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82710.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

9W0N|1|1|G|123
9W0N|1|1|G|124
9W0N|1|1|A|125
9W0N|1|1|A|126
9W0N|1|1|A|127
9W0N|1|1|C|128

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein bL34

Chain t

Large ribosomal subunit protein uL23