HL_9W0N_012

3D structure

PDB id

9W0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

9W0N|1|1|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9W0N_012 not in the Motif Atlas

Homologous match to HL_8B0X_045

Geometric discrepancy: 0.0854

The information below is about HL_8B0X_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9W0N|1|1|G|410
9W0N|1|1|G|411
9W0N|1|1|A|412
9W0N|1|1|C|413
9W0N|1|1|C|414
9W0N|1|1|A|415
9W0N|1|1|U|416
9W0N|1|1|C|417

Current chains

Chain 1

23S rRNA

Nearby chains

Chain l

Large ribosomal subunit protein uL15