HL_9W0N_036

3D structure

PDB id

9W0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

9W0N|1|1|C|1493, 9W0N|1|1|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9W0N_036 not in the Motif Atlas

Homologous match to HL_8B0X_065

Geometric discrepancy: 0.2213

The information below is about HL_8B0X_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49081.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9W0N|1|1|G|1492
9W0N|1|1|C|1493
9W0N|1|1|A|1494
9W0N|1|1|A|1495
9W0N|1|1|A|1496
9W0N|1|1|U|1497
9W0N|1|1|C|1498

Current chains

Chain 1

23S rRNA

Nearby chains

Chain b

Large ribosomal subunit protein uL2