HL_9W0N_066

3D structure

PDB id

9W0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

9W0N|1|1|U|2797, 9W0N|1|1|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9W0N_066 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.2759

The information below is about HL_6VMY_004

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_34080.1

Basepair signature

cWW-cWH-F

Number of instances in this motif group

4

Unit IDs

9W0N|1|1|C|2795
9W0N|1|1|U|2796
9W0N|1|1|U|2797
9W0N|1|1|U|2798
9W0N|1|1|A|2799
9W0N|1|1|A|2800
9W0N|1|1|G|2801

Current chains

Chain 1

23S rRNA

Nearby chains