HL_9WNQ_035
3D structure
- PDB id
- 9WNQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- GACCUUGCCAAGGUC
- Length
- 15 nucleotides
- Bulged bases
- 9WNQ|1|X|A|29, 9WNQ|1|X|G|39
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9WNQ_035 not in the Motif Atlas
- Homologous match to HL_5HR7_005
- Geometric discrepancy: 0.5083
- The information below is about HL_5HR7_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50006.5
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 6
Unit IDs
9WNQ|1|X|G|28
9WNQ|1|X|A|29
9WNQ|1|X|C|30
9WNQ|1|X|C|31
9WNQ|1|X|U|32
9WNQ|1|X|U|33
9WNQ|1|X|G|34
9WNQ|1|X|C|35
9WNQ|1|X|C|36
9WNQ|1|X|A|37
9WNQ|1|X|A|38
9WNQ|1|X|G|39
9WNQ|1|X|G|40
9WNQ|1|X|U|41
9WNQ|1|X|C|42
Current chains
- Chain X
- E-site tRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain G
- 30S ribosomal protein S7
- Chain K
- Small ribosomal subunit protein uS11
- Chain Y
- Transfer RNA; tRNA
- Chain x
- mRNA
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