HL_9WNQ_048

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

9WNQ|1|b|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WNQ_048 not in the Motif Atlas

Geometric match to HL_8B0X_036

Geometric discrepancy: 0.0921

The information below is about HL_8B0X_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

9WNQ|1|b|U|137
9WNQ|1|b|U|138
9WNQ|1|b|U|139
9WNQ|1|b|C|140
9WNQ|1|b|G|141
9WNQ|1|b|A|142

Current chains

Chain b

23S ribosomal RNA

Nearby chains

Chain u

Large ribosomal subunit protein uL23