HL_9WNQ_053

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

9WNQ|1|b|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WNQ_053 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1431

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

9WNQ|1|b|C|305
9WNQ|1|b|U|306
9WNQ|1|b|G|307
9WNQ|1|b|G|308
9WNQ|1|b|A|309
9WNQ|1|b|A|310
9WNQ|1|b|A|311
9WNQ|1|b|G|312

Current chains

Chain b

23S ribosomal RNA

Nearby chains

Chain v

50S ribosomal protein L24