HL_9WNQ_079

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

9WNQ|1|b|A|1453, 9WNQ|1|b|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WNQ_079 not in the Motif Atlas

Geometric match to HL_8B0X_064

Geometric discrepancy: 0.1988

The information below is about HL_8B0X_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00557.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9WNQ|1|b|C|1451
9WNQ|1|b|G|1452
9WNQ|1|b|A|1453
9WNQ|1|b|C|1454
9WNQ|1|b|G|1455
9WNQ|1|b|G|1456
9WNQ|1|b|U|1457
9WNQ|1|b|U|1458
9WNQ|1|b|G|1459

Current chains

Chain b

23S ribosomal RNA

Nearby chains

Chain o

Large ribosomal subunit protein bL17