HL_9WNQ_098

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WNQ_098 not in the Motif Atlas

Geometric match to HL_9E6Q_072

Geometric discrepancy: 0.1888

The information below is about HL_9E6Q_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

8

Unit IDs

9WNQ|1|b|G|2304
9WNQ|1|b|U|2305
9WNQ|1|b|C|2306
9WNQ|1|b|G|2307
9WNQ|1|b|G|2308
9WNQ|1|b|A|2309
9WNQ|1|b|C|2310
9WNQ|1|b|A|2311
9WNQ|1|b|U|2312

Current chains

Chain b

23S ribosomal RNA

Nearby chains

Chain f

Large ribosomal subunit protein uL5