HL_9WNR_051

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WNR_051 not in the Motif Atlas

Homologous match to HL_7A0S_008

Geometric discrepancy: 0.1304

The information below is about HL_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

14

Unit IDs

9WNR|1|b|C|246
9WNR|1|b|G|247
9WNR|1|b|G|248
9WNR|1|b|C|249
9WNR|1|b|G|250
9WNR|1|b|A|251
9WNR|1|b|G|252

Current chains

Chain b

23S rRNA

Nearby chains

Chain 7

Large ribosomal subunit protein bL35

Chain X

Transfer RNA; tRNA

Chain m

50S ribosomal protein L15