HL_9WW4_049

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GUAAC(PSU)A(PSU)GAC

Length

11 nucleotides

Bulged bases

9WW4|1|AA|A|3760

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW4_049 not in the Motif Atlas

Homologous match to HL_9SUM_044

Geometric discrepancy: 0.3612

The information below is about HL_9SUM_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.4

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9WW4|1|AA|G|3757
9WW4|1|AA|U|3758
9WW4|1|AA|A|3759
9WW4|1|AA|A|3760
9WW4|1|AA|C|3761
9WW4|1|AA|PSU|3762
9WW4|1|AA|A|3763
9WW4|1|AA|PSU|3764
9WW4|1|AA|G|3765
9WW4|1|AA|A|3766
9WW4|1|AA|C|3767

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA