HL_9WW5_022

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

9WW5|1|AA|A|1630, 9WW5|1|AA|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW5_022 not in the Motif Atlas

Homologous match to HL_8GLP_024

Geometric discrepancy: 0.0475

The information below is about HL_8GLP_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28253.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9WW5|1|AA|G|1627
9WW5|1|AA|C|1628
9WW5|1|AA|G|1629
9WW5|1|AA|A|1630
9WW5|1|AA|A|1631
9WW5|1|AA|A|1632
9WW5|1|AA|G|1633
9WW5|1|AA|A|1634
9WW5|1|AA|C|1635

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AD

60S ribosomal protein L8

Chain AP

60S ribosomal protein L15

Chain Al

60S ribosomal protein L37