HL_9WW5_039

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GUUCGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW5_039 not in the Motif Atlas

Homologous match to HL_8GLP_042

Geometric discrepancy: 0.0527

The information below is about HL_8GLP_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52776.1

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

3

Unit IDs

9WW5|1|AA|G|2664
9WW5|1|AA|U|2665
9WW5|1|AA|U|2666
9WW5|1|AA|C|2667
9WW5|1|AA|G|2668
9WW5|1|AA|C|2669
9WW5|1|AA|C|2670

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AT

60S ribosomal protein L19

Chain Ar

60S ribosomal protein L37a