HL_9WW5_060
3D structure
- PDB id
- 9WW5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69 Å
Loop
- Sequence
- U(PSU)UGGGUUU(PSU)A
- Length
- 11 nucleotides
- Bulged bases
- 9WW5|1|AA|U|4354
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9WW5_060 not in the Motif Atlas
- Homologous match to HL_8GLP_065
- Geometric discrepancy: 0.2697
- The information below is about HL_8GLP_065
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_14856.1
- Basepair signature
- cWW-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9WW5|1|AA|U|4352
9WW5|1|AA|PSU|4353
9WW5|1|AA|U|4354
9WW5|1|AA|G|4355
9WW5|1|AA|G|4356
9WW5|1|AA|G|4357
9WW5|1|AA|U|4358
9WW5|1|AA|U|4359
9WW5|1|AA|U|4360
9WW5|1|AA|PSU|4361
9WW5|1|AA|A|4362
Current chains
- Chain AA
- 28S rRNA (3773-MER)
Nearby chains
- Chain AN
- 60S ribosomal protein L13
- Chain Ac
- Large ribosomal subunit protein uL15
- Chain Ak
- 60S ribosomal protein L36
- Chain Aq
- 60S ribosomal protein L36a
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