HL_9WW5_074
3D structure
- PDB id
- 9WW5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69 Å
Loop
- Sequence
- CAGCUAGC(PSU)G
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9WW5_074 not in the Motif Atlas
- Homologous match to HL_9SUM_068
- Geometric discrepancy: 0.2104
- The information below is about HL_9SUM_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
9WW5|1|AC|C|47
9WW5|1|AC|A|48
9WW5|1|AC|G|49
9WW5|1|AC|C|50
9WW5|1|AC|U|51
9WW5|1|AC|A|52
9WW5|1|AC|G|53
9WW5|1|AC|C|54
9WW5|1|AC|PSU|55
9WW5|1|AC|G|56
Current chains
- Chain AC
- 5.8S rRNA (156-MER)
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AZ
- 60S ribosomal protein L23a
- Chain Aj
- 60S ribosomal protein L35
- Chain Al
- 60S ribosomal protein L37
- Chain An
- 60S ribosomal protein L39
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