HL_9WW5_082

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

9WW5|1|BA|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW5_082 not in the Motif Atlas

Homologous match to HL_9PN5_082

Geometric discrepancy: 0.3222

The information below is about HL_9PN5_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67772.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9WW5|1|BA|G|288
9WW5|1|BA|G|289
9WW5|1|BA|U|290
9WW5|1|BA|G|291
9WW5|1|BA|A|292
9WW5|1|BA|C|293
9WW5|1|BA|U|294
9WW5|1|BA|C|295

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BB

40S ribosomal protein S4, X isoform

Chain BJ

40S ribosomal protein S11

Chain BW

40S ribosomal protein S6