HL_9WW5_088

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

9WW5|1|BA|A|500

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW5_088 not in the Motif Atlas

Homologous match to HL_9PN5_088

Geometric discrepancy: 0.3829

The information below is about HL_9PN5_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25795.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9WW5|1|BA|C|498
9WW5|1|BA|G|499
9WW5|1|BA|A|500
9WW5|1|BA|C|501
9WW5|1|BA|C|502
9WW5|1|BA|C|503
9WW5|1|BA|G|504

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BB

40S ribosomal protein S4, X isoform

Chain Bc

40S ribosomal protein S24