HL_9WW5_089

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

9WW5|1|BA|U|541, 9WW5|1|BA|U|542, 9WW5|1|BA|C|543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW5_089 not in the Motif Atlas

Geometric match to HL_8Y0B_001

Geometric discrepancy: 0.2935

The information below is about HL_8Y0B_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

9WW5|1|BA|C|539
9WW5|1|BA|U|540
9WW5|1|BA|U|541
9WW5|1|BA|U|542
9WW5|1|BA|C|543
9WW5|1|BA|G|544

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains