HL_9WW5_092

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

UG(PSU)UCAAAG

Length

9 nucleotides

Bulged bases

9WW5|1|BA|G|821

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW5_092 not in the Motif Atlas

Homologous match to HL_9SUM_085

Geometric discrepancy: 0.1353

The information below is about HL_9SUM_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

9WW5|1|BA|U|820
9WW5|1|BA|G|821
9WW5|1|BA|PSU|822
9WW5|1|BA|U|823
9WW5|1|BA|C|824
9WW5|1|BA|A|825
9WW5|1|BA|A|826
9WW5|1|BA|A|827
9WW5|1|BA|G|828

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BB

40S ribosomal protein S4, X isoform

Chain BX

40S ribosomal protein S9

Chain Bc

40S ribosomal protein S24