HL_9XTC_017

3D structure

PDB id

9XTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli delta lepA 30S ribosomal subunit class C, body domain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

9XTC|1|A|U|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XTC_017 not in the Motif Atlas

Homologous match to HL_6CZR_088

Geometric discrepancy: 0.1863

The information below is about HL_6CZR_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.4

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9XTC|1|A|G|786
9XTC|1|A|A|787
9XTC|1|A|U|788
9XTC|1|A|U|789
9XTC|1|A|A|790
9XTC|1|A|G|791
9XTC|1|A|A|792
9XTC|1|A|U|793
9XTC|1|A|A|794
9XTC|1|A|C|795
9XTC|1|A|C|796

Current chains

Chain A

RNA (1176-MER)

Nearby chains

Chain K

Small ribosomal subunit protein uS11