HL_9Y49_025

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

9Y49|1|A5|A|1630, 9Y49|1|A5|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y49_025 not in the Motif Atlas

Homologous match to HL_9PN5_021

Geometric discrepancy: 0.1696

The information below is about HL_9PN5_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28253.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

9Y49|1|A5|G|1627
9Y49|1|A5|C|1628
9Y49|1|A5|G|1629
9Y49|1|A5|A|1630
9Y49|1|A5|A|1631
9Y49|1|A5|A|1632
9Y49|1|A5|G|1633
9Y49|1|A5|A|1634
9Y49|1|A5|C|1635

Current chains

Chain A5

LSU-alpha rRNA (1722-MER)

Nearby chains

Chain A6

Large subunit ribosomal RNA; LSU rRNA

Chain CA

60S ribosomal protein L8

Chain CN

60S ribosomal protein L15

Chain Cj

60S ribosomal protein L37