HL_9Y49_079
3D structure
- PDB id
- 9Y49 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAGCUAGCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9Y49_079 not in the Motif Atlas
- Homologous match to HL_9AXU_071
- Geometric discrepancy: 0.2376
- The information below is about HL_9AXU_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
9Y49|1|A8|C|47
9Y49|1|A8|A|48
9Y49|1|A8|G|49
9Y49|1|A8|C|50
9Y49|1|A8|U|51
9Y49|1|A8|A|52
9Y49|1|A8|G|53
9Y49|1|A8|C|54
9Y49|1|A8|U|55
9Y49|1|A8|G|56
Current chains
- Chain A8
- 5.8S rRNA (157-MER)
Nearby chains
- Chain A5
- Large subunit ribosomal RNA; LSU rRNA
- Chain A6
- Large subunit ribosomal RNA; LSU rRNA
- Chain CX
- 60S ribosomal protein L23a
- Chain Ch
- 60S ribosomal protein L35
- Chain Cj
- 60S ribosomal protein L37
- Chain Cl
- 60S ribosomal protein L39
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