HL_9Y4G_006

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUGG

Length

5 nucleotides

Bulged bases

9Y4G|1|A5|U|224, 9Y4G|1|A5|G|225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y4G_006 not in the Motif Atlas

Homologous match to HL_9AXU_006

Geometric discrepancy: 0.1295

The information below is about HL_9AXU_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.10

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

9Y4G|1|A5|C|222
9Y4G|1|A5|G|223
9Y4G|1|A5|U|224
9Y4G|1|A5|G|225
9Y4G|1|A5|G|226

Current chains

Chain A5

LSU-alpha rRNA

Nearby chains

Chain CC

60S ribosomal protein L4

Chain CY

60S ribosomal protein L26