HL_9Y4G_016

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

9Y4G|1|A5|C|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y4G_016 not in the Motif Atlas

Homologous match to HL_9PN5_014

Geometric discrepancy: 0.1302

The information below is about HL_9PN5_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33597.7

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

139

Unit IDs

9Y4G|1|A5|U|1317
9Y4G|1|A5|C|1318
9Y4G|1|A5|U|1319
9Y4G|1|A5|U|1320
9Y4G|1|A5|G|1321
9Y4G|1|A5|A|1322
9Y4G|1|A5|A|1323
9Y4G|1|A5|A|1324
9Y4G|1|A5|C|1325
9Y4G|1|A5|A|1326

Current chains

Chain A5

LSU-alpha rRNA

Nearby chains

Chain A6

Large subunit ribosomal RNA; LSU rRNA

Chain CB

60S ribosomal protein L3

Chain Ca

60S ribosomal protein L27a

Chain Cb

60S ribosomal protein L29

Chain Ce

60S ribosomal protein L32