HL_9Y4G_023

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

9Y4G|1|A5|A|1630, 9Y4G|1|A5|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y4G_023 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.1893

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28253.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

9Y4G|1|A5|G|1627
9Y4G|1|A5|C|1628
9Y4G|1|A5|G|1629
9Y4G|1|A5|A|1630
9Y4G|1|A5|A|1631
9Y4G|1|A5|A|1632
9Y4G|1|A5|G|1633
9Y4G|1|A5|A|1634
9Y4G|1|A5|C|1635

Current chains

Chain A5

LSU-alpha rRNA

Nearby chains

Chain A6

Large subunit ribosomal RNA; LSU rRNA

Chain CA

60S ribosomal protein L8

Chain Cj

60S ribosomal protein L37