HL_9Y4G_044

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

9Y4G|1|A6|C|2814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y4G_044 not in the Motif Atlas

Homologous match to HL_8GLP_046

Geometric discrepancy: 0.2973

The information below is about HL_8GLP_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9Y4G|1|A6|U|2810
9Y4G|1|A6|G|2811
9Y4G|1|A6|A|2812
9Y4G|1|A6|A|2813
9Y4G|1|A6|C|2814
9Y4G|1|A6|A|2815
9Y4G|1|A6|G|2816

Current chains

Chain A6

LSU-beta rRNA (2108-MER)

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain CR

60S ribosomal protein L19