HL_9Y4G_058

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y4G_058 not in the Motif Atlas

Homologous match to HL_8GLP_061

Geometric discrepancy: 0.4222

The information below is about HL_8GLP_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.3

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9Y4G|1|A6|G|4250
9Y4G|1|A6|A|4251
9Y4G|1|A6|C|4252
9Y4G|1|A6|A|4253
9Y4G|1|A6|G|4254
9Y4G|1|A6|A|4255
9Y4G|1|A6|A|4256
9Y4G|1|A6|A|4257
9Y4G|1|A6|C|4258

Current chains

Chain A6

LSU-beta rRNA (2108-MER)

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain CJ

60S ribosomal protein L11